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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.256420.1 | ||||||||
Common Name | Csa_3G131940, LOC101214530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 346aa MW: 38484 Da PI: 5.044 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.2e-12 | 145 | 196 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ Cucsa.256420.1 145 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 196 79****************************...9*****************9995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.89E-13 | 143 | 200 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 143 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.428 | 144 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.03E-16 | 144 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-9 | 145 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-9 | 150 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.573 | 271 | 345 | IPR002912 | ACT domain |
CDD | cd04873 | 0.00236 | 271 | 335 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010377 | Biological Process | guard cell fate commitment | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MRSRPNFETS ADNSTGILTY FPPNPITSPD KLSFGEVMQF ADFGPKLSLN RFDDDDSEPP 60 GIDPVYFLKF PVLNNERVED TAGGGETEEA AEIGGRSLVV GELEEENFRS NNNNNNNNGN 120 NGNNNNNNKR KRGRTVKTSE EVESQRMTHI AVERNRRKQM NEHLRVLRSL MPGSYVQRGD 180 QASIIGGAIE FVRELEQLLQ CLESQKRRRL LGEPPIVQAA DTPPQQQPPF LPPGAVNFPG 240 HQNDAQIFET TAESKSCLAD VEVKVVGFDA MIKILSRRRP GQLIKAIAAL EDLQLNILHT 300 NITTIEQTVL YSFNVKIASE SRFTAEDIAS SVQQIFNFIH ANTGM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 156 | RMTHIAVERNRR |
2 | 205 | 209 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011650878.1 | 0.0 | PREDICTED: transcription factor FAMA | ||||
Refseq | XP_004133999.2 | 0.0 | PREDICTED: transcription factor FAMA | ||||
Swissprot | Q56YJ8 | 1e-132 | FAMA_ARATH; Transcription factor FAMA | ||||
TrEMBL | A0A0A0L9F4 | 0.0 | A0A0A0L9F4_CUCSA; Uncharacterized protein | ||||
STRING | POPTR_0001s32160.1 | 1e-136 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10489 | 33 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24140.1 | 1e-114 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.256420.1 |
Entrez Gene | 101214530 |
Publications ? help Back to Top | |||
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