PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.256420.1
Common NameCsa_3G131940, LOC101214530
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 346aa    MW: 38484 Da    PI: 5.044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.256420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12145196155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  Cucsa.256420.1 145 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 196
                     79****************************...9*****************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.89E-13143200No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13143199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-16144212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9145196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9150201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.573271345IPR002912ACT domain
CDDcd048730.00236271335No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MRSRPNFETS ADNSTGILTY FPPNPITSPD KLSFGEVMQF ADFGPKLSLN RFDDDDSEPP  60
GIDPVYFLKF PVLNNERVED TAGGGETEEA AEIGGRSLVV GELEEENFRS NNNNNNNNGN  120
NGNNNNNNKR KRGRTVKTSE EVESQRMTHI AVERNRRKQM NEHLRVLRSL MPGSYVQRGD  180
QASIIGGAIE FVRELEQLLQ CLESQKRRRL LGEPPIVQAA DTPPQQQPPF LPPGAVNFPG  240
HQNDAQIFET TAESKSCLAD VEVKVVGFDA MIKILSRRRP GQLIKAIAAL EDLQLNILHT  300
NITTIEQTVL YSFNVKIASE SRFTAEDIAS SVQQIFNFIH ANTGM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145156RMTHIAVERNRR
2205209KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650878.10.0PREDICTED: transcription factor FAMA
RefseqXP_004133999.20.0PREDICTED: transcription factor FAMA
SwissprotQ56YJ81e-132FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A0A0L9F40.0A0A0A0L9F4_CUCSA; Uncharacterized protein
STRINGPOPTR_0001s32160.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104893340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-114bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]